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Common Issues

Last Updated: January 3, 2026

8 min read

Navigating Git can sometimes feel like walking a tightrope. One wrong step, and you could find yourself in a precarious situation, battling issues that can disrupt your workflow. Understanding common Git issues and knowing how to resolve them can save you from headaches and lost productivity.

This chapter delves into the most frequent problems developers encounter while using Git, providing practical solutions and insights that will boost your confidence.

Merge Conflicts

Merge conflicts occur when Git can't automatically reconcile differences between two branches. This often happens during a merge or rebase when both branches have changes in the same part of a file. When encountering a merge conflict, Git will pause the operation, allowing you to resolve the issue manually.

Identifying Merge Conflicts

When Git detects a conflict, it will output something like this:

You can see which files have conflicts by running:

The conflicted files will be marked as "Unmerged."

Resolving Merge Conflicts

To fix this issue, open the conflicting file(s). Git marks the conflicting sections within the file:

You need to manually edit this file to decide which changes to keep. After resolving the conflict, remove the conflict markers (<<<<<<<, =======, >>>>>>>) and save the file. Then, stage the resolved file:

Finally, complete the merge:

Best Practices to Avoid Merge Conflicts

  • Communicate with your team: Coordinate changes on shared files.
  • Pull frequently: Regularly pull the latest changes to minimize divergence.
  • Break changes into smaller commits: Smaller changes are easier to manage and less likely to conflict.

Detached HEAD State

A detached HEAD state occurs when you check out a specific commit instead of a branch. In this state, any changes you make won’t belong to any branch, making it easy to accidentally lose them if you switch branches.

Recognizing a Detached HEAD

You can identify a detached HEAD when you see a message indicating that you are not on a branch:

Recovering from Detached HEAD

If you find yourself in a detached HEAD state and want to keep your changes, create a new branch from this state:

This command saves your changes to a new branch, allowing you to continue working without losing your progress.

When to Use Detached HEAD

  • Exploring past commits: You might want to examine the state of your project at a specific commit.
  • Testing: You can make temporary changes without affecting your main branches. Just remember to create a new branch if you want to keep those changes.

Stashing Changes

Stashing is a powerful feature that allows you to temporarily set aside uncommitted changes. This can be particularly useful when you need to switch branches quickly but don't want to commit incomplete work.

Using git stash

To stash your changes, run:

Git will take your working directory and index, save them in a stack, and revert your working directory to match the HEAD commit.

Viewing Stashed Changes

You can see a list of your stashed changes with:

Each stash entry is identified by a name like stash@{0}.

Applying Stashed Changes

When you're ready to retrieve your stashed changes, you can either apply or pop them:

  • Apply (keeps the stash in the list):
  • Pop (removes the stash from the list):

If you encounter conflicts when applying stashed changes, resolve them just like a merge conflict.

Best Practices for Stashing

  • Use descriptive messages: You can add a message while stashing:
  • Stash selectively: If you only want to stash specific changes, you can specify files:

Stashing is a great way to keep your workspace organized while allowing flexibility in your workflow.

Rebase Issues

Using git rebase can streamline your commit history, but it can also lead to complications if not used carefully. Rebase is designed to replay commits on top of another base commit, which can lead to conflicts if the branches have diverged significantly.

Recognizing Rebase Problems

During a rebase, if conflicts arise, Git will pause and prompt you to resolve them. You might see messages similar to those in a merge conflict. The rebase process will halt until you resolve the conflicts.

Resolving Rebase Conflicts

  • Identify conflicts: Check the status:

Look for files listed as "unmerged."

  • Resolve conflicts: Open the conflicted files and handle them as described in the merge conflict section.
  • Continue rebase: After resolving conflicts, stage the changes and continue rebasing:
  • Abort if necessary: If the rebase becomes too complex, you can abort:

This will return your branch to its state before the rebase attempt.

Best Practices for Rebasing

  • Rebase before merging: Keep your feature branch updated before merging it into the main branch.
  • Avoid rebasing shared branches: Rebasing alters commit history, which can disrupt others if they depend on those commits.

Dealing with Large Repositories

As repositories grow, performance can decline, leading to common issues like slow clone times, sluggish operations, or increased repository size. Managing large repositories effectively requires understanding how to keep them lean and responsive.

Identifying Performance Bottlenecks

If you notice slow operations, try running:

This command provides insights into the size of your repository and the number of objects in it.

Strategies for Managing Large Repositories

  • Use .gitignore: Prevent unnecessary files from being tracked by adding them to a .gitignore file. This helps to reduce clutter in the repository.
  • Split up large repositories: If a project has grown unwieldy, consider splitting it into smaller, more manageable repositories. This can be done using Git submodules or separate repositories altogether.
  • Utilize shallow clones: For large repositories, you can perform a shallow clone to limit the history cloned:

This will only fetch the latest commit, significantly reducing the amount of data downloaded.

Using Git LFS

For projects that manage large binary files, consider using Git Large File Storage (LFS). Git LFS replaces large files with text pointers inside Git while storing the file contents on a remote server.

To set up Git LFS, install it and then track specific file types:

This will ensure that large files are handled efficiently, avoiding performance issues related to size.

Uncommitted Changes on Branch Switch

One of the most common frustrations is trying to switch branches when you have uncommitted changes. If those changes conflict with the target branch, Git won’t let you switch.

Resolving Uncommitted Changes

When you attempt to switch branches and encounter an error like this:

You have several options:

Commit your changes: If the changes are complete, commit them:

Stash your changes: If you aren’t ready to commit yet, stash them:

You can now switch branches without losing your changes.

Discard changes: If the changes aren’t necessary, you can discard them:

Best Practices for Branch Management

  • Use feature branches: Always create a new branch for features or fixes. This isolates changes and reduces conflicts.
  • Regularly merge or rebase: Keep your feature branches updated with the main branch to minimize divergence and conflicts.

Now that you understand common issues that can arise while using Git, you are ready to explore how to fix mistakes effectively. In the next chapter, we will look at practical strategies for correcting errors and recovering from unforeseen mishaps in your repository. Get ready to turn those mistakes into learning opportunities!